Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
4JLN Chain:B ((38-280))
-----------------GTRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSN---------ELTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
4JLN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121498 for 1813 contacts (-67.0/contact) +
2D Compatibility (PS) -24389 + (NN) -4912 + (LL) 1164
1D Compatibility (HY) -33600 + (ID) 11500
Total energy: -194735.0 ( -107.41 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_4JLN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLN-query.scw
PDB file :
Tito_Scwrl_4JLN.pdb
: