Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLTLNKTDLIPASFILNGVPGLEDTQLWISFPFCSMYVVAMVGNCGLLYLIHYEDALHKPMYYFLAMLSFTDLVMCSSTIPKALCIFWFHLKDIGFDECLVQMFFTHTFTGMESGVLMLMALDRYVAICYPLRYSTILTNPVIAKVGTATFLRGVLLIIPFTFLTKLLP-----YCRGNILPHTYCDHMSVAKLSCGNVKVNAIYGLMVALLIWG--------FDILCITNSYTMILRAV----------VSLSSADARQKAFNTCTAHIC-----AIVFSYTPAFFSFFSHRFGEHIIP-PSCHIIVANIYLLLPPTMNPIVYGVKTKQIR--DCVIRILSGSKDTKSYSM---------------------------------------------------------------------------------------------------------------------------------- |
| 3ODU Chain:A ((37-502)) | ----------PCFREENA----NFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVANWYF-GNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216561 for 1987 contacts (-109.0/contact) +
2D Compatibility (PS) -30955 + (NN) 2095 + (LL) 1184
1D Compatibility (HY) -15200 + (ID) 2100
Total energy: -261537.0 ( -131.62 by residue)
QMean score : 0.091
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