Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNHTVIRTFILLGLT---------------GDPHLQVLLFIFLFLTYMLSVTGNLTIITLTLVDHHLKTPMYFFLRNFSFLEVSFTTVCIPRFLYNISMGDNTITYNACASQIFFVILFGATEFFLLAAMSYDRYVAICKPLHYVVIMNNRVCTLLVLCCWVAGLMIIVPP-------LSLGLQLEFCDSNAIDHFSCDAGPLLKISCSDTWVIEQMVILMAVFALIITLVCVILSYLYIVRTILKFPSVQQ----RKKAFSTCSSHMIVVSIAYGSCIFIYIKPSAKDEV-------AINKGVSVLTTSVAPLLNPFIYTLRNKQVKQAFSDSI------------------KRIAFLSKK |
1U19 Chain:A ((4-349)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQC----SCGIDYYTPH----------EETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -239576 for 2284 contacts (-104.9/contact) +
2D Compatibility (PS) -29505 + (NN) 2207 + (LL) 872
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -269252.0 ( -117.89 by residue)
QMean score : 0.126
|
|
|