Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRHSKRTHCPDWDSRESWGHESYRGSHKRKRRSHSSTQENRHCKPHHQFKESDCHYLEARSLNERDYRDRRYVDEYRNDYCEGYVPRHYHRDIESGYRIHCSKSSVRSRRSSPKRKRNRHCSSHQSRSKSHRRKRSRSIEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKN---VGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHH------GHVCIVFELLGLSTYDFIKENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYVVKYNSKMKRDERTLKNTDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILA-LGWSQPCDVWSIGCILIEYYLGFTVFQTHDSKEHLAMMERILGPIPQHMIQKTRKRKYFHHNQLDWDEHSSAGRYVRR----RCKPLKEFMLCHDEEHEKLFDLVRRMLEYDPTQRITLDEALQHPFFDLLKKK |
1CM8 Chain:A ((23-315)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------VRAVYRDLQPV------AVCSAVDG-RTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRH--EN----VIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNE-------------------DCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSD--------------EAKNYMKGLPELEKKDFASILT---NASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHQV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CM8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208070 for 2155 contacts (-96.6/contact) +
2D Compatibility (PS) -29239 + (NN) -6040 + (LL) 9016
1D Compatibility (HY) -25600 + (ID) 4000
Total energy: -263933.0 ( -122.47 by residue)
QMean score : 0.463
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