Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEKKLKAAVVLSGCGHLDGAEVREVVLSLLVLDQQEVEVKCFAPDIN-ITQVVNHKTTEAVKEKRNVLVEAARVARSEICDLKEAKAEDFDMLVVPGGYGVAKNLSDLAEDKEVVTVIPEFERLVSEFFATKKPIGAICIS-PAIIVS--ILSSKTSKGESKIKVTIGDDREKLIEKLGGEHIKCDTGLSIEDEEHNVFSCSAYMR---RDESTYSVYQGIKHMIDSMVKKTNKRI
3OT1 Chain:A ((9-189))
----SKRILVPV-----AHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQG-----------SRGVWL-------TAEQTLEACSAEAFDALALPGGVGGAQAFA----------DSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVG--------ARMTCHPNFFDHIPSERLS--R---QRVCYYATQHLLTSQGPGTALEFALAMIALLAG-VELAQHVAAPMVLHP
General information:
TITO was launched using:
RESULT:
Template:
3OT1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95728 for 1540 contacts (-62.2/contact) +
2D Compatibility (PS) -18566 + (NN) -1938 + (LL) 3272
1D Compatibility (HY) -3200 + (ID) 1550
Total energy: -117710.0 ( -76.44 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_3OT1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OT1-query.scw
PDB file :
Tito_Scwrl_3OT1.pdb
: