Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFAVEQAKLAKKNDEIPIGAVIVSGDN-IISFAHNI---SNDPTAHAEMLVIRQACELLSTSVLCNADMYVTLEPCPMCAQAISFARIKRLYFGAYNSKGGGIENGAKIFQ--FCSHVPEVYGGVLETECSFLLKDFFEKLRDSTNYY
1Z3A Chain:A ((13-158))
MRHALTLAKRAWDEREVPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIK--
General information:
TITO was launched using:
RESULT:
Template:
1Z3A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115037 for 1175 contacts (-97.9/contact) +
2D Compatibility (PS) -15454 + (NN) -9642 + (LL) 12
1D Compatibility (HY) -9600 + (ID) 2800
Total energy: -152521.0 ( -129.81 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1Z3A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z3A-query.scw
PDB file :
Tito_Scwrl_1Z3A.pdb
: