Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVSSDTELIKSTIMSIIDQNKGRDIVTFDVQNKTIIAKYMIIASGDSSRHVKALAEHVMKSLKQYYKMDVEGMDEGNWVILNFQGIMVHIFRPEVREYYKIEELWN
1D1N Chain:A ((143-240))
----YEEKVIGQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQG----IVVYEGEIDSLKRY-KDDVREVAQGYECGLTIKN-FNDIKEGDVIEAYVMQEVAR
General information:
TITO was launched using:
RESULT:
Template:
1D1N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60994 for 765 contacts (-79.7/contact) +
2D Compatibility (PS) -10224 + (NN) 949 + (LL) 1068
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -72951.0 ( -95.36 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_1D1N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D1N-query.scw
PDB file :
Tito_Scwrl_1D1N.pdb
: