Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSISLSVLDDSVLIKPINEE-K-QGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERIALTVKAGDKVFYRQWAG-TEIEHGSEKLIVMKESDILAIIK
1PCQ Chain:O ((1-96))
---MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE
General information:
TITO was launched using:
RESULT:
Template:
1PCQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22461 for 551 contacts (-40.8/contact) +
2D Compatibility (PS) -9670 + (NN) 2048 + (LL) 152
1D Compatibility (HY) -8000 + (ID) 1950
Total energy: -39881.0 ( -72.38 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_1PCQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PCQ-query.scw
PDB file :
Tito_Scwrl_1PCQ.pdb
: