Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MCLNFREDNVMKKIMVIFGTRP----EAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADH---DLNIMQDQQTLADLTANALAKLDSIINEEQPDMILVHG-DTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIA-----AKNLLFENKDKERIFITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKD--VVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDS-----GGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVI--GTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPLRHK |
| 3C48 Chain:A ((19-438)) | --------SHMRVAMISMHTSPLQQGMNVYILSTATELAKQGI-EVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTL-AAVKNSYDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGTERSRRELGIPLHTKVVAFVGRLQPFKG--PQVLIKAVAALFDRDPDRNLRVIICGGPSDTYRHMAEE-LGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGG-LPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANENVDGETHHG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C48.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116043 for 3126 contacts (-37.1/contact) +
2D Compatibility (PS) -41238 + (NN) -16688 + (LL) 1012
1D Compatibility (HY) -800 + (ID) 3350
Total energy: -177107.0 ( -56.66 by residue)
QMean score : 0.393
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