Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIINTTRLPEALGPYSHATVVNGMVYTSGQIPLNVDGKIVSADVQAQTKQVLENLKVVLEEAGSDLNSVAKATIFIKDMNDFQKINEVYGQYFNEHK--PARSCVEVARLPKDVKVEIELVSKIKEL
1QD9 Chain:A ((1-124))
TKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDT--HKPARSCVEVARLPKDALVEIEVIALVK--
General information:
TITO was launched using:
RESULT:
Template:
1QD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41646 for 941 contacts (-44.3/contact) +
2D Compatibility (PS) -13567 + (NN) -7840 + (LL) 388
1D Compatibility (HY) -13200 + (ID) 3500
Total energy: -79365.0 ( -84.34 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_1QD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QD9-query.scw
PDB file :
Tito_Scwrl_1QD9.pdb
: