Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRK-ERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK
3HD1 Chain:A ((3-142))
---AYIAIGSALASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEM----------------
General information:
TITO was launched using:
RESULT:
Template:
3HD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106592 for 1001 contacts (-106.5/contact) +
2D Compatibility (PS) -14475 + (NN) -4360 + (LL) 1800
1D Compatibility (HY) -11600 + (ID) 2800
Total energy: -138027.0 ( -137.89 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3HD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HD1-query.scw
PDB file :
Tito_Scwrl_3HD1.pdb
: