Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGIIGAMEEEVTILKNKLTQLSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADATAFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTA-KVGLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL
3EEI Chain:A ((6-233))
-VAVIGAMEQEIELLREMMENVKAVSFGRFSAYEGELAGKRMVLALSGIGKVNAAVATAWIIREFAADCVINTGSAGGLGKGLKVGDVVIGTETAHHDVDVTAFGYAWGQVPQLPARFASDGILIEAAKRAARTFEGAAVEQGLIVSGDRFVHSSEGVAEIRKHFPEVKAVEMEAAAIAQTCHQLETPFVIIRAVSDSADEKADISFDEFLKTAAANSAKMVAEIVKSL
General information:
TITO was launched using:
RESULT:
Template:
3EEI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134780 for 2079 contacts (-64.8/contact) +
2D Compatibility (PS) -24505 + (NN) -9643 + (LL) 208
1D Compatibility (HY) -20000 + (ID) 5250
Total energy: -193970.0 ( -93.30 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_3EEI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EEI-query.scw
PDB file :
Tito_Scwrl_3EEI.pdb
: