Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MDDLNKKYLIDLHQHQNSSIEVLREFAEGNEVPI--VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFA-SISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDK----VYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKGE
2AVD Chain:A ((11-229))
QCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQ-----PPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI-
General information:
TITO was launched using:
RESULT:
Template:
2AVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105594 for 1710 contacts (-61.8/contact) +
2D Compatibility (PS) -21922 + (NN) -4637 + (LL) 632
1D Compatibility (HY) -9200 + (ID) 2200
Total energy: -142921.0 ( -83.58 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_2AVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AVD-query.scw
PDB file :
Tito_Scwrl_2AVD.pdb
: