Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEVKTFYNGNTMPQIGLGTFRVENDENCMESVKYAIEQGYRSIDTAKVYGNEEQVGAGIRAGLESTGIAREDLFITSKLYFEDFGRENVAAAYEASLSRLGLKYLDLYLVHWPG------------------TNEAVMVDTWKGMEDLYKNNKAKNIGVSNFEPEHLEALLAQ--VSIKPVINQVEYHPYLTQHKLKLYLAAQHIVMESWSPL----------MNAQILNDETIKDIAQELGKSPAQVVLRWNVQHGVVIIPKSVTPNRISENFQIFDFELSDEQMTRIDGLNQDKRIGPDPKTFEG |
4GA8 Chain:A ((13-297)) | -----------MPIVGLGTWKSPLGK-VKEAVKVAIDAGYRHIDCAYVYQNEHEVGEAIQEKIQEKAVKREDLFIVSKLWPTFFERPLVRKAFEKTLKDLKLSYLDVYLIHWPQGFKSGDDLFPKDDKGNAIGGKATFLDAWEAMEELVDEGLVKALGVSNFSHFQIEKLLNKPGLKYKPVTNQVECHPYLTQEKLIQYCHSKGITVTAYSPLGSPDRPWAKPEDPSLLEDPKIKEIAAKHKKTAAQVLIRFHIQRNVIVIPKSVTPARIVENIQVFDFKLSDEEMATILSFNRNWR---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GA8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115801 for 2157 contacts (-53.7/contact) +
2D Compatibility (PS) -27404 + (NN) -10097 + (LL) 340
1D Compatibility (HY) -29600 + (ID) 6000
Total energy: -188562.0 ( -87.42 by residue)
QMean score : 0.424
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