Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVIKINNLNKVFGDNE----VLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEG---NDLTEKGTQVDKLRQ-KMGMVFQNFNLFPHKKVVDNIILAPKLLKKD---NNDELHKEALSLLDKVGLKEK-ADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKE-GMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
1L2T Chain:A ((1-223))
--MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD--DELTKIRRDKIGFVFQQFNLIPLLTALENVEL-PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEV--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144513 for 1678 contacts (-86.1/contact) +
2D Compatibility (PS) -23157 + (NN) -11615 + (LL) 2132
1D Compatibility (HY) -20400 + (ID) 4850
Total energy: -202403.0 ( -120.62 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_1L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2T-query.scw
PDB file :
Tito_Scwrl_1L2T.pdb
: