Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MTDEAKFVLLQL--------------YSIYLGRIDEGMSKHSASYFGSDESSFNA-FFLGFNFEDYIDAVLELK---HRDFVIASAE--DGGFLEMALSREGIAYSESESKKDYKTLMGLIRDLKKLII
4JYS Chain:A ((5-136))
DKPYVKTESGILYKDLIDGEGDPIEEGDIVYIHYQGKTTNDFRIIHSTFNSIIPPKIRAGQYDQKHIRAIYEIVIGMKKHTRRQCVVPPHLAYPNHFPSQPLLYEIDVVKVVKKDSQGKTFIEKVEQKIDQI-
General information:
TITO was launched using:
RESULT:
Template:
4JYS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6295 for 653 contacts (-9.6/contact) +
2D Compatibility (PS) -11000 + (NN) 2947 + (LL) 204
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -19744.0 ( -30.24 by residue)
QMean score : 0.146
(partial model without unconserved sides chains):
PDB file :
Tito_4JYS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JYS-query.scw
PDB file :
Tito_Scwrl_4JYS.pdb
: