Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNYTVKIKNSAKSDLRKIKHSYLKKSFLEIVETL--KNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLILSAWSHYD
1Z8M Chain:A ((1-88))
--MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDELILLRLGSHSELF
General information:
TITO was launched using:
RESULT:
Template:
1Z8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9559 for 542 contacts (-17.6/contact) +
2D Compatibility (PS) -9040 + (NN) -1985 + (LL) 180
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -26154.0 ( -48.25 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_1Z8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z8M-query.scw
PDB file :
Tito_Scwrl_1Z8M.pdb
: