Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLD---NNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQN-IDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKD
2OB0 Chain:A ((5-155))
SRIELGDVTPHNIKQLKRLNQVIFPVSYN----------DKFYKDVLEV-GELAKLAYFN-DIAVGAVCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYY-KRIEPADAHVLQKNL--
General information:
TITO was launched using:
RESULT:
Template:
2OB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55424 for 1106 contacts (-50.1/contact) +
2D Compatibility (PS) -15362 + (NN) -4421 + (LL) 224
1D Compatibility (HY) -4400 + (ID) 1650
Total energy: -81033.0 ( -73.27 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2OB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OB0-query.scw
PDB file :
Tito_Scwrl_2OB0.pdb
: