Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKENLPIVFGPVLSRRFGKSLGVDLSPSKKQCNYNCIYC----ELGKAKPIERMEEVIKVETLISTIQNALNNLTTPIDVLTITANGEPTLYPHLLELIQSIKPFLKGVKTLILSNGSLFYEPKVQQALKEFDIVKFSLDAIDLKAFERVDKPYSKDINKILEGILSFSQIYQGQLVAEVLLIKGVNDSANNLKLIADFLKKINTARVDLSTIDRPSSFKAPK------LSEDELLKCSLFFEGLCVSLPKRSTAQAKKLVSCGIDELLALIS--RRPLSAEEAPLILDPNAFKHL-----ETLLNHKQITIKKVGSLEFYCAF------------------------ |
1TV8 Chain:A ((3-329)) | ---EQIKDKLG-----RPIRDLRLSVT---DRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE---LGVKKIRITG-GEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNR-NIKATTILEQIDYATSIGL-NVKVNVVIQKGIN-----DDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1TV8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -117826 for 2172 contacts (-54.2/contact) +
2D Compatibility (PS) -30556 + (NN) -13029 + (LL) 480
1D Compatibility (HY) -7600 + (ID) 2800
Total energy: -171331.0 ( -78.88 by residue)
QMean score : 0.325
|
|
|