Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------MKSNFQYSTLENIPKAFDILKDP---PKKL-------YCVGDIKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNG--------AVIVSGGALGVDIIAQENALPKTIMLSPCSLDFIYPTNNHK---------------------VIQEIAQN----GLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQAD-------LKSGSMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIF--NIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRIN------HLVVLA------ |
| 4HNE Chain:A ((2-384)) | PLGSPEFAAQAQALAAQAAAAAHAAQAHRERNEFPEDPEFEAVVRQAELAIERCIFPERIYQGSSGSYFVKDPQ----GRIIAVFKPKNEEPYGHLNP-KWTKWLQKFGRDCLVLNQGYLSEAGASLVDQKLELNIVPRTKVVYLASETFNYSAIDRVKSRGKRLALRFNRIGLPPKVGSFQLFVEGYKDADYWLRRFEAEPLPENTNRQLLLQFERLVVLDYIIRNTDRGNDNWLIKYDCPPVIKVAAIDNGLAFPLKHPDSWRAYPFYWAWLPQAKVPFSQEIKDLILPKISD--PNFVKDLEEDLYELFKKDPGFDRGQFHKQIAVMRGQILNLTQALKDNKSPLHLVQMPPVIVET |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HNE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -62591 for 1798 contacts (-34.8/contact) +
2D Compatibility (PS) -26796 + (NN) -9508 + (LL) 940
1D Compatibility (HY) -9200 + (ID) 2250
Total energy: -109405.0 ( -60.85 by residue)
QMean score : 0.308
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