Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------MLEKQHIQYFKNLVGGEDFFTDLAHLNAYCYDATKE----------RHLPSGVIFPKNEREISQILKYCNEHRLIVVPRGAGSGFTGGAL----SVSGGLVLSVEKHLDKILEI--DTKNLIARVEPGVINKHFQNEVEKLDLF-----YPPDPASENQSTLGGNVAENAGGMRAAKYGITK-----DYVMALRVVLANG--EIIRAGKKTIKDVAGFNIAGLMIASE------------------------GCLGVISEITLKLLAKPPLKQSAMGVFNHIEDAMNAV----YKTMSSGVTPVAMEFLDNLSIKAVEERFSKGLPKDAGAILITQVDGVVKE-----------------QIAWQLNEIEKHFKANGCVGFKIAQNEQEEQDLWFSRRNA-----SQSISVYGKKKLNED----------VTVPRASLPSLLQEVAKISQKYGFKI-----PCFGHTGDGNVHVNIML---EDPKRDLEKGHKAMEEIFQAAISLEGTLSGEH--GIGLSKAKFMPLAFNH---SEMELFRNIKKALDPNNILNPFKMGL------------ |
| 1VAO Chain:A ((6-560)) | EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYF--LASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRV--SGSVVLDMGKNMNRVLEVNV--EGAYCVVEPGVTYHDLHNYLEANNLRDKLWL-DVPDL-GG-GSVLGNAVERGVGYTP-------YGDHWMMHSGMEVVLA--NGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQS-NMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLG-MALQNVPTIRHILLDAAVL-GDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLP----NGAHLFFSPIAKVS----GEDAMMQYAVTKKRCQE-AGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAAN---GWGEYRT--HLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VAO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120943 for 3127 contacts (-38.7/contact) +
2D Compatibility (PS) -45565 + (NN) -14867 + (LL) 1304
1D Compatibility (HY) -11600 + (ID) 4250
Total energy: -195921.0 ( -62.65 by residue)
QMean score : 0.280
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