Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLDQLEV-SHDADSLCVVIEISKHSN-IKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLLALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAYQG
3FQ3 Chain:D ((23-195))
-NIDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSEDGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGDWGDEDYARKFIVEAIERAK-
General information:
TITO was launched using:
RESULT:
Template:
3FQ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66867 for 1282 contacts (-52.2/contact) +
2D Compatibility (PS) -18110 + (NN) -4605 + (LL) 36
1D Compatibility (HY) -18000 + (ID) 3800
Total energy: -111346.0 ( -86.85 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3FQ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FQ3-query.scw
PDB file :
Tito_Scwrl_3FQ3.pdb
: