Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGYIPYVIENTERGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQKNVK
3MT6 Chain:Y ((A-203))
--LVPMVIEQT----RSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH---
General information:
TITO was launched using:
RESULT:
Template:
3MT6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122564 for 1391 contacts (-88.1/contact) +
2D Compatibility (PS) -19919 + (NN) -7050 + (LL) 276
1D Compatibility (HY) -24400 + (ID) 6450
Total energy: -180107.0 ( -129.48 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_3MT6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MT6-query.scw
PDB file :
Tito_Scwrl_3MT6.pdb
: