Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDDLIQKEFLAHKEALEKSLESLQDALKQSVHLLIETLENQGKILICGNGGSASDAQHFAAELTGRYKLER---KGLSVISLSTDTSALTAIANDYGYEEVFARQVEALGNKEDILIGISTSGNSKNVLKAYEKAKDLGMKTLSLAGRDGGKMKPLSDIALIVPSGDTPRIQEMHILMIHILCDCIERHFARKN
1TK9 Chain:A ((5-187))
---NLVEKEWQEHQKIVQAS-EILKGQIAKVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTT---DTSALSAIGNDYGFEFVFSRQVEALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDDTARIQEMHILIIHTLCQIIDESF----
General information:
TITO was launched using:
RESULT:
Template:
1TK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67136 for 1451 contacts (-46.3/contact) +
2D Compatibility (PS) -19808 + (NN) -16804 + (LL) 1164
1D Compatibility (HY) -11200 + (ID) 4100
Total energy: -117884.0 ( -81.24 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_1TK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TK9-query.scw
PDB file :
Tito_Scwrl_1TK9.pdb
: