Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVALGVLAFANVLMATDVKALVKGCAACHGVKFEKKALGKSKIV---NMMSEKE--IEEDLMAFKSGANKNPVMTAQAKKLSDEDIKALAKYIPTLK
4O1W Chain:F ((13-78))
----------------------------CAACHG------AAGVSAVPTYPNLAGQKEAYLTKQLNDFKSGKRNDPTMKGMVMALSPADMENLAAYYANM-
General information:
TITO was launched using:
RESULT:
Template:
4O1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10879 for 368 contacts (-29.6/contact) +
2D Compatibility (PS) -6622 + (NN) -3176 + (LL) 3820
1D Compatibility (HY) -3600 + (ID) 1250
Total energy: -21707.0 ( -58.99 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_4O1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O1W-query.scw
PDB file :
Tito_Scwrl_4O1W.pdb
: