Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKYTELKDKSIKELEELLHAKKAELFELRVKLK-NMQLSNPNEIKKARRNIARINTAINAYYSSSVE
1JJ2 Chain:U ((1-65))
TVLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGD----
General information:
TITO was launched using:
RESULT:
Template:
1JJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2648 for 354 contacts (7.5/contact) +
2D Compatibility (PS) -6988 + (NN) -5887 + (LL) 240
1D Compatibility (HY) 800 + (ID) 950
Total energy: -10137.0 ( -28.64 by residue)
QMean score : 0.801
(partial model without unconserved sides chains):
PDB file :
Tito_1JJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJ2-query.scw
PDB file :
Tito_Scwrl_1JJ2.pdb
: