Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFGLNIDHIVTLREVRKTYEPEILEALFIAKNTHKVDLITIHLREDKRHIQNEDVLRLLEISPLPINIECSINAEITDFLCSLKNKPSKVTIVPENRNEVTTEGGLDCS--LKGLEEVIRAYHNKGIEVSLFVDPLKDALHFAKEHQVKQVEFHTGVYANLHNALYSNANNQIHAISTLKDKCPKELKEELHNAFLQLRRMSKEAFFM---GIVVCAGHGLNYSNVKELLKIPSLRELNIGHSVVSKAVLVGLEKAILEMAQLIKR
3F4N Chain:B ((9-242))
--LGVNIDHIATLRNARGTIYPDPVQAAFIAEQA-GADGITVHLREDRRHITDRDVRILRQTIQTRMNLEMAVTDEMVDIACDIK--PHFCCLVPEKRQ----EGGLDVAGQVDKMTLAVGRLADVGILVSLFIDADFRQIDAAVAAGAPYIEIHTGAYADASTVLERQA---------------------------ELMRIAKAATYAAGKGLKVNAGHGLTYHNVQPIAALPEMHELNIGHAIIGQAVMTGLAAAVTDMKVLMRE
General information:
TITO was launched using:
RESULT:
Template:
3F4N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174385 for 1963 contacts (-88.8/contact) +
2D Compatibility (PS) -24828 + (NN) -16747 + (LL) 2668
1D Compatibility (HY) -15600 + (ID) 4500
Total energy: -233392.0 ( -118.90 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_3F4N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F4N-query.scw
PDB file :
Tito_Scwrl_3F4N.pdb
: