Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGDLKLRPLEREDLKFVHRLNNDAKIMSYWFEEPYEAFVELQELYDKHIHDQSERRFILELDGQ--MVGLVELMEIDYIHRRAEFQIIIDPKFQGHGYAVSATKLAMKYAFHVLNMHKLYLVVDKVNEKAIHVYEKVGFIREGELIDEFFVDGTYHDAIRMCIFQHQYREMDI
4MJ8 Chain:C ((7-171))
---QLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELEELYNKHIHDNAERRFVVE-DAQKNLIGLVELIEINYIHRSAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKY-----
General information:
TITO was launched using:
RESULT:
Template:
4MJ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95296 for 1145 contacts (-83.2/contact) +
2D Compatibility (PS) -17324 + (NN) -6557 + (LL) 724
1D Compatibility (HY) -22000 + (ID) 4850
Total energy: -145303.0 ( -126.90 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4MJ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MJ8-query.scw
PDB file :
Tito_Scwrl_4MJ8.pdb
: