Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSRKKGIILVLSVILIFSIGLLVNNLMTNNKDTAKPKKKTVAAVKKKKETPPKPKEPFNIDFTGDIMFDWDLRPV-LAEKGMDYPFNNVREELKSSDYTFVDLETAITTRTKKVPYQEFWIKSDPSSLTALKNAGVDMVNISNNHILDYYEDGLLDTTAALRANNLAYVGAGKNEDEAYQLKVADIKGNKVGFMSFCHFF--PNTGWIADEDTPGVTNGYDLNLVEEK---IKEERAKNKDIDYMVVYFHW--GVEKTNT--PVDYQTQYVKKLVDDNLVDAIVASHPHWLQGFEVYKD------VPIAYSLGNFLFPDYVSGHSAETGIYKLNFDQGKVTAHFDPGIISGNQINMLEGSSKTAQLNYLQSISPNATINSNGDISAK |
| 4HNE Chain:A ((2-384)) | ----------------------------PLGSPEFAAQAQALAAQAAAAAHAAQAHRERN-EFPEDPEFEAVVRQAELAIERCIFPERIYQG--SSGSYFVKDPQGRIIAVFKP-KNEEPYGHLNPKWTKWLQKFGRD-CLVLNQGYLSEAGASLVDQKLELNIVPRTKVVYLASETFNYSAIDRVKSRGKRLALRFNRIGLPPKVGSFQLFVEGYKDADYWLRRFEAEPLPENTNRQLLLQFERLVVLDYIIRNTDRGNDNWLIKYDCPPVIKVAAIDNGLAFPLKHPDSWRAYPFYWAWLPQAKVPFSQEIKDLILPKI-SDPNFVKDLEEDLYELFKKDPGFDRGQFH-KQIAVMRGQILNLTQALKDNKSPLHLVQMPPVIVET |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HNE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 44556 for 2415 contacts (18.4/contact) +
2D Compatibility (PS) -34718 + (NN) 1784 + (LL) 3808
1D Compatibility (HY) -6000 + (ID) 3000
Total energy: 6430.0 ( 2.66 by residue)
QMean score : 0.089
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