Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEYKNGENRIYAVND-EGVEVGEVTFVPTGEDMFIIDHTGVDDAARGQGIAQELVKRAVEKAKSEGKKIVPLCPF-----AKAEFSKKPEYQEVEASK
3D8P Chain:A ((53-138))
-------GQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNG-FR------
General information:
TITO was launched using:
RESULT:
Template:
3D8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11504 for 493 contacts (-23.3/contact) +
2D Compatibility (PS) -8930 + (NN) -8260 + (LL) 1004
1D Compatibility (HY) -4800 + (ID) 600
Total energy: -33090.0 ( -67.12 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_3D8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D8P-query.scw
PDB file :
Tito_Scwrl_3D8P.pdb
: