Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLF-KWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
1G4C Chain:B ((3-134))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPATLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1G4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112884 for 971 contacts (-116.3/contact) +
2D Compatibility (PS) -13925 + (NN) -4366 + (LL) 2208
1D Compatibility (HY) -10800 + (ID) 2750
Total energy: -142517.0 ( -146.77 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_1G4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4C-query.scw
PDB file :
Tito_Scwrl_1G4C.pdb
: