Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRNYHVKFLNEKDVELAEAVCAASEDYYLIEQDKSASKSDALKIITEIPDGKTRFDKFVLAVLDENEKPIGLVDIVS---DYPRKGRWFIGLLLLTPDARHNGLGKVLHQTIKEWASDGGADSLALGVLAENEKGRGFFEHLGYTKEETKQASYGGKEQEVSIFTLAIK
1QSM Chain:A ((3-152))
--DNITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIK-----MWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYKAPKILYKRKGY-------------
General information:
TITO was launched using:
RESULT:
Template:
1QSM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55982 for 984 contacts (-56.9/contact) +
2D Compatibility (PS) -15882 + (NN) -5937 + (LL) 1980
1D Compatibility (HY) -7200 + (ID) 1450
Total energy: -84471.0 ( -85.84 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_1QSM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QSM-query.scw
PDB file :
Tito_Scwrl_1QSM.pdb
: