Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------MKNIMLVCNAGMSTGMLAKKIEAASGN----TLNVTAYSESEYTDYLDGVDLVLIGPQIRFLMPQIKQAVSVPVHAISPVKYGIMDGKGVYEDIQKLIGG
1TVM Chain:A ((1-113))
MGSSHHHHHHHHENLYFQGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSFGDI------PLVHGMPFVSG-VGIEALQNKILTILQG
General information:
TITO was launched using:
RESULT:
Template:
1TVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54257 for 561 contacts (-96.7/contact) +
2D Compatibility (PS) -9570 + (NN) -3715 + (LL) 888
1D Compatibility (HY) -6400 + (ID) 800
Total energy: -73854.0 ( -131.65 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_1TVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TVM-query.scw
PDB file :
Tito_Scwrl_1TVM.pdb
: