Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYVITTELPSA-EEFVQLRVDAGLSFR---AIEASRKALLKSVYFVGLRSKENGKLIGMGRLVGDG---------IMFIVSDIAVFPSFQGKGFGKVIMTHIKDYIEANLDKTACVTLLA-DVPAHGLYKQFGFRESAPASIGMIYQVGN
1S3Z Chain:A ((20-158))
-HMDIRQMNKTHLEHWRGLRKQLWPGHPDDAHLADGEEILQADHLASFIAMA-DGVAIGFADASIRHDYVNGCDSSPVVFLEGIFVLPSFRQRGVAKQLIAAVQRWGTNKGCREMASDTSPENTISQKVHQALGFEETERV----------
General information:
TITO was launched using:
RESULT:
Template:
1S3Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70631 for 877 contacts (-80.5/contact) +
2D Compatibility (PS) -13620 + (NN) -6232 + (LL) 880
1D Compatibility (HY) -1200 + (ID) 900
Total energy: -91703.0 ( -104.56 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_1S3Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S3Z-query.scw
PDB file :
Tito_Scwrl_1S3Z.pdb
: