Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYKIKEMPLEELEPKVVEGLLEHKERLGYNIPKKDTEYIGFAALSEVGEMVGGVTAKISYGELHVSLLSVDPSTQGSGVGTELMAQIERYGRANSCHHISLTTFSYQAPEFYRKCGFTELGRVKDFPIKGEEKYFFIKYL
1Y9W Chain:A ((40-140))
---------------------------------------VSLVVKNEEGKIFGGVTGTMYFYHLHIDFLWVDESVRHDGYGSQLLHEIEGIAKEKGCRLILLDSFSFQAPEFYKKHGYREYGVVEDHP-KGHSQHFFEKRL
General information:
TITO was launched using:
RESULT:
Template:
1Y9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54448 for 681 contacts (-80.0/contact) +
2D Compatibility (PS) -10980 + (NN) -3274 + (LL) 3180
1D Compatibility (HY) -9200 + (ID) 2050
Total energy: -76772.0 ( -112.73 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1Y9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y9W-query.scw
PDB file :
Tito_Scwrl_1Y9W.pdb
: