Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEKLDTVLGYLKEFPDYYKYVTKKTYTLNEKIIFEDEKAKSIFFIVEGYAAVELEDNLRKTNYISIFVLPYNVLGIDAFSSYPKKKHSITVMSESLMLYKIDADFLLNILSIKPDVNDFLLTSIADVFARHYALLGMIAKT-PKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINKKSPYRI-DKDSLDI---------------------
1OMI Chain:A ((16-248))
-GSEFKKYLETNG--------IKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQE---------LSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
General information:
TITO was launched using:
RESULT:
Template:
1OMI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112138 for 1411 contacts (-79.5/contact) +
2D Compatibility (PS) -21121 + (NN) -3390 + (LL) 1532
1D Compatibility (HY) -11200 + (ID) 1550
Total energy: -147867.0 ( -104.80 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_1OMI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OMI-query.scw
PDB file :
Tito_Scwrl_1OMI.pdb
: