Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGINTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAMINVIYSTPG--ISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANAFMYKAMMKVFENLTENEIEELIRLNKKVETLLKKSK
3ZMD Chain:A ((27-174))
---TRWLTDTEQCAWRTHLEVNRLLTHQLEKDLQPFGLTMNDYEILVNLSESEGDRMRMSDLATATMQSKSRLSHQITRMENANLVRREN--CESDRRGLFAVLTEHGLETMRKV-APHHVASVRRHFIDLLAPEDLTELDKALKPIAEHLRGQ-
General information:
TITO was launched using:
RESULT:
Template:
3ZMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53262 for 887 contacts (-60.0/contact) +
2D Compatibility (PS) -15850 + (NN) -6560 + (LL) 460
1D Compatibility (HY) -2800 + (ID) 1150
Total energy: -79162.0 ( -89.25 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_3ZMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZMD-query.scw
PDB file :
Tito_Scwrl_3ZMD.pdb
: