Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDILRDIGVIARALDSISNIEFKELNLAKGQFIYLVRICEN--QGIIQEKLVDILKIDRTTASRAIKNLEKNGLIIKKQNKNNKKNKLLFPTEKGQQLYPLIIRENEYSNAVALKGFTEAEINMLTDALKKVKENIADDWLYVKKGNKRSY
3BRO Chain:A ((6-139))
-RDLGRLLKIASNQMSTRFDIFAKKYDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYMDSDQSQMTSGLNKEEVVFLEKILKRMIE-----------------
General information:
TITO was launched using:
RESULT:
Template:
3BRO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32825 for 835 contacts (-39.3/contact) +
2D Compatibility (PS) -14276 + (NN) -2268 + (LL) 1044
1D Compatibility (HY) -7600 + (ID) 1350
Total energy: -57275.0 ( -68.59 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3BRO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BRO-query.scw
PDB file :
Tito_Scwrl_3BRO.pdb
: