Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGIPILKLGECLLISIQSELDDHTAVEFQEDLLAKIHETSARGVVIDITSIDFIDSFIAKILGDVVSMSKLMGAKVVVTGIQPAVAITLIEL-GITFSG-VLSAMDLESGLEKLKQELGE
2VY9 Chain:A ((6-119))
---PILKVDDYWVVAIEETLHDQSVIQFKEELLHNITGVAGKGLVIDISALEVVDSFVTRVLIEISRLAELLGLPFVLTGIKPAVAITLT-EMGLDLRGMATAL-NLQKGLDKLKNLAR-
General information:
TITO was launched using:
RESULT:
Template:
2VY9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89483 for 760 contacts (-117.7/contact) +
2D Compatibility (PS) -12022 + (NN) -6319 + (LL) 712
1D Compatibility (HY) -11200 + (ID) 1800
Total energy: -120112.0 ( -158.04 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_2VY9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VY9-query.scw
PDB file :
Tito_Scwrl_2VY9.pdb
: