Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKDIDWSNLGFSYIKTDKRYISYWKDGEWDEGALTEDNTLHISEGSTALHYGQQCFEGLKAYRCKDGSINLFRPDRNAARIQKSCERLLMPHIPTEKFIDAVMQVVRANEEFVPPYGTGATLYLRPFVIGVGDNIGVHAAPEYIFSVFCSPVGPYFKGGMAPTNFIVSD--FDRAAPNGTGAAKVGGNYAASLLPGQAAKERNFGDCIYLDPATHTKIEEVGSANFFGI-TKDD---KFVT-PYSPSILPSITKYSLLYLAEHRLGLEAVEGDVYIDKL------DEFKEAGACGTAAVITPIGGIQTKD-DFHVFHSETEVGP-VTKRLFDELCGIQFGDVEAPEGWIYKVK |
1KTA Chain:B ((28-365)) | ---------LVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPD-AAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDH-QLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHI--PTMENGPELILRFQKELKEIQYG-IRAHE-WMFPV- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1KTA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -146679 for 2605 contacts (-56.3/contact) +
2D Compatibility (PS) -34810 + (NN) -12733 + (LL) 480
1D Compatibility (HY) -29600 + (ID) 5400
Total energy: -228742.0 ( -87.81 by residue)
QMean score : 0.414
|
|
|