Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMMVMGSVGCGKTTLCQKLHGYDIL--YKKTQAV-------E-----YFQEMIDTPGEFVQHRQLYSALTVTAADASVIAILQSVTEKKQTFS-PMFA----SI--FAKPVIGIVTKVDLAESDK-DIERAERELRMAGAKHIFYISSVEETGIEELRAYLED
2GF9 Chain:A ((23-180))
-FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE----RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF-EFFEASAKENINVKQVFERLV-
General information:
TITO was launched using:
RESULT:
Template:
2GF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69874 for 1010 contacts (-69.2/contact) +
2D Compatibility (PS) -14396 + (NN) 457 + (LL) 620
1D Compatibility (HY) -4400 + (ID) 1200
Total energy: -88793.0 ( -87.91 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_2GF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GF9-query.scw
PDB file :
Tito_Scwrl_2GF9.pdb
: