Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHKVGILGGTFDPPHLAHLHMAEEAKKQLELEKILFLPNKIPPHKHISGMASINERVEMLQLMIEGIDSFEIDTRELMRTGKSYTYDTMRDMIIEQPDTDFYFIIGGDMVEYLPKWYHIDDLVKMVTFVGVNRPLYQPEVPYDVVKIDMPKTTISSTEIRNDIEHAEA---FLPEKVWSYIKEHQLYGKK
2H29 Chain:B ((3-187))
---KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLY---
General information:
TITO was launched using:
RESULT:
Template:
2H29.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115377 for 1401 contacts (-82.4/contact) +
2D Compatibility (PS) -19863 + (NN) -8982 + (LL) 272
1D Compatibility (HY) -17600 + (ID) 3300
Total energy: -164850.0 ( -117.67 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_2H29.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H29-query.scw
PDB file :
Tito_Scwrl_2H29.pdb
: