Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGN--YYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDVVANAVQKIKGIVETEHLKTERVIHRYKKMLEGLQ
1ZNW Chain:A ((20-201))
---VGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV---------------------
General information:
TITO was launched using:
RESULT:
Template:
1ZNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86711 for 1305 contacts (-66.4/contact) +
2D Compatibility (PS) -19915 + (NN) -12803 + (LL) 2404
1D Compatibility (HY) -11600 + (ID) 3550
Total energy: -132175.0 ( -101.28 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_1ZNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZNW-query.scw
PDB file :
Tito_Scwrl_1ZNW.pdb
: