Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDLPLSKRVKGVAPSPTLAITAKAKQMKQEGIDVIGLGAGEPDFNTPQNIIDAAIESMNKGFTKYTPSSGIIELKQAIVDKLKKDQFLNYE-TNQIFVGTGAKHVLYSAFQTILDPGDEVIIPVPYWVTYPEQVKLAGGIPVFVETGFDADFKISAADFEKAITKKTKAIVLNSPNNPSGMCYTKEELIAIGEVAEKHQIYILSDEIYEKLYYGNKADLVSIASLSDRLYDLTIVINGVSKAYSMTGWRIGYAAANKEIIAGMSKLADHLTSNPTANAQYAALEAYVG--SQEVPEKMYQAFEERMERFYPELNSIPGFKPKKPDGAFYFFIEVKEAA-HKKGFQDVDAFVAALLEEAKVAVIPGSGFGMP--DYIRLSYATNPDLFQEAINRIKSFMK |
| 1DJU Chain:B ((2-383)) | ----LSDRLELVS-------------------DVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY-DDARHYSIASL-DGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTGLTSKKFSEL------MLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMERMERVLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1DJU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221834 for 3219 contacts (-68.9/contact) +
2D Compatibility (PS) -39915 + (NN) -24080 + (LL) 1892
1D Compatibility (HY) -31600 + (ID) 7350
Total energy: -322887.0 ( -100.31 by residue)
QMean score : 0.588
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