Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKNTIKWIAIGFAGIILLPLLIVFFIYKKAVGKKDYNPEVLENLDKASQEFVKNTSPLSDVDSRYKYMRLATKALPSAKDIEIGDVENKKIDGPAGKIPIRIYTPQEDGPFEIIVYYHGGGFVLGGLQTHDAIARKLVQTTGARVVTVDYRLAPENPFPAAVEDAYAALLWVQNHRTSLR-AKSSD-IIVAGDSVGGNLATVVTQIAKSKGKPNITAQILLYPATDI-FSRDASVLYPSMDEFAEGYVLTKESLDKFFKLYIANASDRKYDPLVAPIRSKDLVGLPKTFIATAEFDPLRDQGEAYAKKLKDAGVEVFAKRFEKVPHGFMTTNSEATDETYELISEFLEEK |
| 3DNM Chain:C ((97-297)) | -----------------------------------------------------------------------------------------------------------------ILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENPFPAAVDDCVAA------YRALLKTAGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSRWSNSNLADRDFLAE-----PDTLGEMSELYV-GGEDRK-NPLISPVYA-DLSGLPEMLIHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDMPHVF---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DNM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93136 for 1769 contacts (-52.6/contact) +
2D Compatibility (PS) -21380 + (NN) -13535 + (LL) 10516
1D Compatibility (HY) -12000 + (ID) 4000
Total energy: -133535.0 ( -75.49 by residue)
QMean score : 0.572
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