Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKKVIVACGSGVATSQTVASKVERILKEKGVRA-TVEAVDIKSLEQH----IKTSDVYVAITKANKEFDIPTLNGIAFLTGMGMDEETEKLLNALK-
1VKR Chain:A ((375-471))
SHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTN--FLDSGLYTSLTERLVAAQRH
General information:
TITO was launched using:
RESULT:
Template:
1VKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38589 for 598 contacts (-64.5/contact) +
2D Compatibility (PS) -9620 + (NN) -3010 + (LL) 348
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -55921.0 ( -93.51 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_1VKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKR-query.scw
PDB file :
Tito_Scwrl_1VKR.pdb
: