Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKMAVISLVLLLFLVGCGKEEAAQKPEQKTDKEPKIVATTVAITEIMDKLDLPLVGIPSSSKKLPKRYADVKET---GSPMGPDLEIIRMLKPDMVLSTKTLEADLKSGFE-GADLEADFLDFTSIASMQTEIKNLGAKFDRIEEATKLNKDLTSDIDQVKSNVAKKKKPTVLILMGVPGSYLVVTEHAYIGDLVKLAGGENVIKDQKVEYLASNTEYLQSANPDIILRAAHGMPAEVVKMFDEEFKTNDIWKHFDAVKNNRVYDLDENLF---GMTASLNAPEALKEMEKMLYDN |
2CHU Chain:A ((10-296)) | LPISMSDEGDSFLVKDSLGENKIPKNPS-------KVVILDLGILDTFDALKLNDKVVGVPAKNLPKYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNANFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIV--DEDKKALIILTNSNKISAFGPQSRFGIIHDVLGINAVDENIKGKSI--NSEFILEKNPDYIFVVDRNVILGNKERAQGILD-NALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CHU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -90958 for 2261 contacts (-40.2/contact) +
2D Compatibility (PS) -29350 + (NN) -10198 + (LL) 408
1D Compatibility (HY) -8400 + (ID) 2500
Total energy: -140998.0 ( -62.36 by residue)
QMean score : 0.443
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