Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKEAGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDE--RQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMDLEIPTGVPLVYELNADLKPVNKYYLDK
4GPI Chain:C ((5-227))
-KLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKNLKPI-------
General information:
TITO was launched using:
RESULT:
Template:
4GPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82229 for 1810 contacts (-45.4/contact) +
2D Compatibility (PS) -23827 + (NN) -7691 + (LL) 540
1D Compatibility (HY) -17600 + (ID) 6300
Total energy: -137107.0 ( -75.75 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_4GPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GPI-query.scw
PDB file :
Tito_Scwrl_4GPI.pdb
: