Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNYLSLSEEVKQAKAEGKAIVALESTIISHGMPYPQNVEM-ARDVEQIIRDNGAVPATIALIDGKIKIGLSDEELELFAKSSNVAKVSRRDIGYLIATKQLGATTVAATMICAELAEIGIFVTGGIGGVHRGAETTMDVSADLEELAKTNVAVVCAGAKSILDLNLTMEYLETKGVPVIGYQTDVLPAFYTRSSDVELTLRADTPEVIAESLKAKWD-LQIE----GGAVITNPIPEEFAMD-EKVINDVIQTALKEAEENHIHGKDVTPFLLGKVKELTD-GKSLEANIELVKHNALIGTQIAVAYQNI |
3G8Q Chain:A ((1-278)) | MKVSLA-GQTVDVKKILNEIPKRTVTAALLEGGEIVAVEEADDEHAERKLVRRHDVEGKVVFVTARP----------CLYCARELAEAGVAGVVYLGRGRGLGPYYLARSGV--EVVEVHPDEPLGYDPVDR-----LDVLLTFGGNPYLTEEDVAARVYCLLTGR--------------GFDADIAPAPENLSGRVEIMVTRGDPDEAVELLKEELPVFRIRRFLISGEFDRDELRERILEDIEPRILDPFAVRARIARAGAFSSSREAEVFIGDVLTSVGREVNLNDPRTVVTVDVL-GPRVSVGVEKR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3G8Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57112 for 2186 contacts (-26.1/contact) +
2D Compatibility (PS) -28062 + (NN) 3054 + (LL) 2720
1D Compatibility (HY) -7600 + (ID) 2550
Total energy: -89550.0 ( -40.97 by residue)
QMean score : 0.194
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