Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDL--TNNGEKTSHEELAKKL-TQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYED---AISSDEFSLSYLAAPSSKVWLLMLDTAIYK--------------TNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTE-GAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSVFPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPK-S-DGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
| 2NXF Chain:A ((3-322)) | ------------------------------------DPVFTFGLIADVQYADIEDGENYLRTRRR-------YYRGSADLLRDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEFYNFSRPSLLSSRLNSAQGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPV--HPCAADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTDSS----GAQHITLEGVIETPPH----------------------------------------------------------------------------------SHAFATAYLYEDRMVMKGRGRVEDLTITYS--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NXF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -50811 for 2508 contacts (-20.3/contact) +
2D Compatibility (PS) -31182 + (NN) -10976 + (LL) 7888
1D Compatibility (HY) -3200 + (ID) 1850
Total energy: -90131.0 ( -35.94 by residue)
QMean score : 0.306
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